How to build a protein structure prediction app in Python using ESMFold and Streamlit

In this video, we'll build a web app for predicting the protein structure in Python. Briefly, ESMFold is used as the protein structure prediction engine while Streamlit is used as the web framework. This app will be built in a little over 60 lines of code.

App built using the Streamlit app starter kit

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#datascience #machinelearning #dataprofessor

[wolfpain]

Thank you for this great job. Definitely I'm going to use this in my next streamlit app

[anasssofti]

It will help me a lot on my bioinformatics journey, thank you

[kevinalexis]

Please do more Bionformatics videos, your playlist is awesome!

[Acer]

This is awesome. Thanks for sharing it.

[khanhnguyentan]

This is so interesting. Hope you can make a tutorial video on how to design new molecules based on deep learning. Thanks sir

[Dr.Gashaw.M_Goshu]

Thanks for sharing. Did you use random amino acid sequences or a known sequence?

[wdofjiq]

Excellent! Please select a known drugable enzyme and add an analysis function to estimate the Kd for a candidate set of pharmacophores.

[sapta]

Hi can you please make a video on fine tuning of Protein Large language models and getting sequence embeddings. Thank you for making all these videos, they are really helpful

[adityavardhanjain]

the api referenced is getting an authentication error. What can an alternative be?

[danceprometheus]

Really want to make a protein ligand docking app like AutoDock Vina. Would you do that next?

[ntifhhh]

do you know of a way to add constraint to the prediction. Let's say I did crosslink mass spec so I know some residue need to be close, can I add that to the prediction?

[shoebkhan]

Your videos are great. Can you make a video on how to get started with snowpark(snowflakes python api)

[yosufzamil]

Thanks, sir. I watched your most of the videos. Helped a lot.
I would like to know how we can interact with drugs and protein using ML, DL.

[nithyagobi-bnfz]

Could you please make video on protein mutation prediction server development like polyphen2, mutation assesser SNAP2

[fehmeedamustafa]

Can we predict protein structure using graph data structures...any code available?

[vasilispanagiotopoulos]

Hello sir, thanks for the very informative video. I tried to use your app placing a protein sequence from Uniprot (P34998 · CRFR1_HUMAN), but it showed no result... is there any restriction in the number of aminoacids used?? thank you

[eschoi]

Currently, the website is not working for query protein sequence.

[allensun]

How do I get streamlit? There is an error when I type in the code into Jupyter, it does not recognize "streamlit"...

[qaziacademy]

Hi Sir. I m watching ur videos and r very good informative videos. Please guide me in my PhD word. My research work is related to Prediction of AntiCancer Peptides using Deep Learning. I want to extract features through Natural Language Processing Techniques. Please guide me how to extract via NLP.. Thanks Sir

[fernandavictor]

Keep up the awesome work!!! I am suprised that you haven't researched "promo sm".