Genomespace

0:00:55

Normalize breast cancer copy number variation profiles

0:06:05

Differential Expression Enrichment Analysis using GenomeSpace

0:23:24

GenomeSpace Orientation Webinar - Feb. 29, 2016 - Question & Answer session

0:02:03

Importing and running a Galaxy workflow v2

0:05:28

Identify biological functions for genes in CNV regions using GenomeSpace

0:04:53

Tip of the Week: GenomeSpace (integrator of integrators)

0:00:55

Converting BAM to BigWig

0:00:50

Obtaining a reference genome using Galaxy

0:01:14

Processing the reference genome using Picard.CreateSequenceDictionary and SAMtools.FastaIndex

0:13:56

2016-07-08 Ted Liefeld 'GenomeSpace'

0:35:58

GenomeSpace Orientation Webinar - Feb. 29, 2016 - Webinar Presentation

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Importing Galaxy workflow to identify regions of significantly different genes

0:00:41

Download a collection of chromosome cytoband gene sets

0:00:49

Finding differentially expressed genes (GenePattern 'ComparativeMarkerSelection' Module)

0:02:08

Visualizing gene knock-outs using RNA-Seq data in the Integrative Genomics Viewer (IGV)

0:00:50

Running gene set analysis in Genomica

0:01:19

Search for significant overlap with known genesets using MSigDB

0:01:23

Identifying DNA modification regions and their influence on associated gene expression

0:01:53

Reprocess the filtered RNA-seq data into a new file

0:01:07

Gene expression analysis using the ComparativeMarkerSelection tool in GenePattern

0:01:00

Galaxy Genome Trailer (Android/iOS space game)

0:04:18

Driving Biological Project - Step 1

0:00:44

Find genes in CNV regions using the 'Operate on Genomic Intervals' tool in Galaxy

0:01:02

Process the RNA-seq file in Galaxy