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Computer Architecture - Lecture 8: Intelligent Genome Analysis (ETH Zürich, Fall 2020)
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Lecture 8: Intelligent Genome Analysis
Date: October 15, 2020
00:00 - What is Genome Analysis?
18:42 - What is Intelligent Genome Analysis?
28:22 - How we Analyze Genome?
55:25 - Let's learn how to map a read to a reference genome
1:16:30 - What Makes Read Mapper Slow?
1:29:07 - Algorithmic & Hardware Acceleration
1:38:45 - Seed Filtering Technique
1:47:25 - Pre-alignment Filtering Technique
1:48:56 - GateKeeper
2:13:44 - Shouji
2:23:45 - SneakySnake
2:35:10 - GRIM-Filter
2:43:19 - Read Alignment Acceleration & GenASM
2:46:51 - AirLift
2:47:44 - Where is Read Mapping Going Next?
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