Bioinformatics for Beginners | Download Normal & Tumor gene expression data | tcga database | Python

Download cancer/tumor gene expression data from TCGA using Python

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Python for bioinformatics
Python for beginners
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[gabrielmateomejia]

Excelent tutorial. It was just what i needed =)

[zakraskaro]

How does one identify the batch information for each of the TSV files? Is it in the metadata and if so where? I need to look at batch effects as confounders. Thanks for your help.

[khyatipatni]

thank you so much for the help. i am getting this EmptyDataError: No columns to parse from file, despite my file do contains data, can you resolve this?

[rubykhan]

Hello, this code is not working in Python.

[Maryashahere]

Hello metadata file is empty, what can be done?

[howcani]

Excuse me get_ids gives me error "NameError: name 'get_ids' is not defined', how to solve please ?

[Funtooseoooo]

how to use python unable to develop path