Bioinformatics Parallel Programming - Tutorial (Kmer counting in Python) - HPC

Hi every one! In this video I will teach how setup a embarrassingly parallel program in python for counting kmers in a fasta file :-) (See GitHub link below)
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How to indexing a fasta file 5:11
Initialize main 12:28
Finding kmers 16:55
How to sub-index a sequence 19:11
Introduce parallelization 25:20
Run parallel on test file 28:34
Run parallel on full human genome 35:04
Results and pros and cons parallelization 36:48
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GitHub link:

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