Creating a Phylogenetic Tree

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This video tutorial accompanies Chapter 4 of 'Genetics: Genes, Genomes, and Evolution' by Meneely, Hoang, Okeke, and Heston.

© Oxford University Press
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The best tutorial on Phylogenetics tree construction for me.
Thanks

emmanuelfenibo
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A&F 11
B&F 11
C&F 11
D&F 10
E&F 10

regardless those few mistakes, final graph is correct!

roerin
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I believe there is an oversight on the creation of this Table:
ATCGTGGTACTG - Index A
TGGCCCTGTATC - Index F
Both have length a of 12
they both have only 1 common letter between them (the second letter from the right)
so 12-1=11 not the 10 printed in the Table itself.

skillgan
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Thanks for the valuable video, it's really help me at last night before the exam and really easy to understand.

nuramin
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Would you please explain the neighbour joining, maximum-parsimony, maximum-likelihood & other tree building methods.
Thank you.

babusheikh
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Isn't this technically the WPGMA method and not UPGMA? UPGMA takes into account the number of clusters when combining the rows whereas this just takes the average of two.

NinjaTactiks
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I believe for (A*F), (B*F) and (C*F) it is supposed to be 11.

queennetshivhulana
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awesome, Thanks for the great explanation!

mrdanymotion
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Thank you very much
it helped me a lot😀

abhisheknayak
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Using ML and MP nyc one to understand PT <3

Kidsfun-dx