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Proteome Annotations | Bacterial Genomes | PATRIC Part 3 | Lecture 63 | Dr. Muhammad Naveed
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Proteome Comparison:
Comparing Annotated Proteins Across Genome.
PATRIC’s Proteome Comparison tool can readily identify insertions and deletions in up to nine target genomes that are compared with one reference, which can be a researcher’s personal genome in PATRIC. This genome has been annotated outside PATRIC, any publicly available genomes in PATRIC, or a set of proteins you have saved in PATRIC as a feature group.
The Proteome Comparison tool is based on the original Sequence-based Comparison tool part of RAST[1]. This tool colors each gene based on protein similarity using BLASTP and marks each gene as either unique, a unidirectional best hit, or a bidirectional best hit compared to the reference genome. The output includes a whole-genome schematic that is colored based on BLAST. A table that details all the results can be downloaded for further analysis, as can a scalable vector graphic (SVG) diagram of the effects of publication quality.
About Dr. Muhammad Naveed
(Associate Professor, Biotechnology, University of Central Punjab, Lahore)
With distinction, Dr. Muhammad Naveed obtained a Ph.D. degree in Biotechnology (Genomics & Bioinformatics) from Quaid-e-Azam University, Islamabad. He has won Ph.D. indigenous & IRSIP scholarships from HEC. He has done Pre-Doc research at the University of Ghent, Belgium. HEC awarded him the best Ph.D. (IRSIP) Scholar of the year in 2013 & QAU honored him as “Distinguished Alumni” in 2017. He is doing research projects in Bioinformatics & Molecular Biotechnology. He has supervised 45 MSc. and 50 MPhil. & 01 Ph.D. He has published 76 Research articles with 283 impact factor and 1000 citations, 01 book, and 03 book chapters. He has been awarded distinguished “Researcher of the Years (2016, 2018 & 2019)” by UoG and UCP.
#Proteome #ProteomicAnalysis #PATRIC
Comparing Annotated Proteins Across Genome.
PATRIC’s Proteome Comparison tool can readily identify insertions and deletions in up to nine target genomes that are compared with one reference, which can be a researcher’s personal genome in PATRIC. This genome has been annotated outside PATRIC, any publicly available genomes in PATRIC, or a set of proteins you have saved in PATRIC as a feature group.
The Proteome Comparison tool is based on the original Sequence-based Comparison tool part of RAST[1]. This tool colors each gene based on protein similarity using BLASTP and marks each gene as either unique, a unidirectional best hit, or a bidirectional best hit compared to the reference genome. The output includes a whole-genome schematic that is colored based on BLAST. A table that details all the results can be downloaded for further analysis, as can a scalable vector graphic (SVG) diagram of the effects of publication quality.
About Dr. Muhammad Naveed
(Associate Professor, Biotechnology, University of Central Punjab, Lahore)
With distinction, Dr. Muhammad Naveed obtained a Ph.D. degree in Biotechnology (Genomics & Bioinformatics) from Quaid-e-Azam University, Islamabad. He has won Ph.D. indigenous & IRSIP scholarships from HEC. He has done Pre-Doc research at the University of Ghent, Belgium. HEC awarded him the best Ph.D. (IRSIP) Scholar of the year in 2013 & QAU honored him as “Distinguished Alumni” in 2017. He is doing research projects in Bioinformatics & Molecular Biotechnology. He has supervised 45 MSc. and 50 MPhil. & 01 Ph.D. He has published 76 Research articles with 283 impact factor and 1000 citations, 01 book, and 03 book chapters. He has been awarded distinguished “Researcher of the Years (2016, 2018 & 2019)” by UoG and UCP.
#Proteome #ProteomicAnalysis #PATRIC
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Proteome Annotations | Bacterial Genomes | PATRIC Part 3 | Lecture 63 | Dr. Muhammad Naveed
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