Genome Assembly Workflow Tutorial with SPADes | llumina Reads | Bioinformatics 101 for Beginners

In this tutorial you get to learn how to perform genome assembly using the SPADes assembly tool.
genome assembly, spades genome assembly, illumina reads assembly

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Materials
________________________________________________________________________________________________
Source of data
SRA-database

Input Files
read 1
read 2

How to install Spades



Genome Assembly Tutorial with SPADes | llumina Reads | SPAdes | Bioinformatics 101 for Beginners

#Bioinformatics #Linux #Anaconda #Genomes

#bioinformatics #bioinformática #bioinformaticsforbeginners #genome #genomesequencing #genomics #linuxforbeginners #bioinformática

[DaliScience-eqjv]

Please let me know whether we can do reference guided assembly using spades

[muhammadakmal]

Very well explained. I always enjoy watching your videos.

[dejenieshiferaw]

Thank you very much, excellent presentation.

[Jersley]

Great work Vincent. This is a very useful tutorial for beginners.

[bioinformaticscoach]

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[SammyBioinfo]

Thank you for video. I always love to watch your video.

While running spades, it's showing me error after running for a while.
'system call for: finished abnormally, OS return value :21

Please what can I do?

[joycealvarezbarragan]

Hello Vincent, great work.
I am new in SPADes and Linux so maybe my question will be simple: do you have to load SPADes in the console? I have seen several tutorials and this is the first time I cross with this. Thank you for your help, my program is not working and maybe that is the cause.

[danielsoenarto]

Hi, how do you calculate the total length of the contigs.fasta?