An Introduction to Molecular Dynamics

A Brief introduction to molecular dynamics. For more similar videos see

[rhysknight]

Great explanation Thunderf00t I was half expecting you to start telling me why atoms were bullshit

[behnamasid]

Is this Thunderf00t? amazing video mate 

[wertytrewqa]

thanks thunderf00t. u made this simple to understand

[amitimsc]

Garbage in garbage out! Heard the term after many years :) Thank you.

[jorgejimenez]

Bro wtf its thunderf00t. I'm in biochem in the year 2022. flash back boys

[willch]

which software do u recommend for molecular dynamics simulations?

[egs]

can anyone tell me the maximum length of time achievable for an MD run?

[AleaTeo]

Can you please tell me what's he saing from 0:06 to 0:09, I don't get it. I mean I don't get why he concludes that "it means that they come out has hard spheres". Thanks

[InfiniteUniverse]

Do these models take steric hindrance into account?

[science_]

nice explanation. the simplest way to define MD simulation.

[essentialsofbiology]

Beautiful! Just one question - I couldn't make out the words at 0:06 - 'and what with the six twelve potentials typically used to represent such things?'

[science_]

i am using orca for QM calculations. but not able to do the MM part. is there any tutorial video for open source QM/MM interface? can anyone give any suggestion.

[ranam]

Can I simulate hydrogen plus oxygen gives water products to reactants with only telling number of Hydrogen atoms and oxygen atoms where the equations satisfy scrodinger equation so the reactants will give this product for checking every chemical equations without memorizing the equations please tell me if IAM wrong simply can I check the chemical equations even the sulphuric acid preparation reactions or uranium reactions or just combine two atoms and can I tell their products

[omarbarghouth]

i have some questions about molecular simulation, can you answer me please ?

[jersonantigua]

can someone help me interpret my docking results?

[drnosy]

Hi! Can someone explain what the axes are for plot at 1:32? Thanks!

[bonbonpony]

So how do you calculate the interactions between charged particles when there's so many of them? I'm pretty sure that calculating the attraction/repulsion between each pair of particles would be _extremely_ inefficient. Are there any better ways of doing that?

[MarmotsreFun]

Sorry for the very basic question, but would this method be used to predict the 3-D structure of a glycoprotein if you knew the amino acid sequence and the structure of the attached glycans?

[hulusicengiz]

Hello there, these sources are great and thanks for sharing with us. I need to ask you something about molecular dynamics simulations which is showing in this video which program was used to create? I try to use Matlab simulation as you know that has a lot of option. Can you suggest me to use which program for this? Thanks for interesting.

[עדיבריל]

hi, i would like to use a small part of this video for a project i am working on.
is there a way i could purchase a licence to use it?