Find Differentially Expressed Genes (DEGs) | scRNA-Seq Analysis in Seurat

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Finding differentially expressed genes (DEGs) from single-cell data using Seurat in R.

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  1. math et al
  2. differentially expressed genes
  3. degs
  4. seurat
  5. single cell
  6. scrna seq
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Комментарии
Автор

Thank you so much!
I'd be delighted if you put up more Seurat package tutorials...especially those where you generate visuals like violin plots, heat maps, Umaps, etc...:D

Biomeducated
Автор

Thank you very much for the video!
I have a conceptual question. In your video you test for DEGs with log-normalized data. I have seen now multiple instances advising against it and using raw count data (eg. Luecken and Theis, 2019). I didn't find good reasoning for it yet. Why did you decide to you normalized data instead of raw count data?

Keep up the good work.

Wocher
Автор

Do u suggest any online work shop for Seurat. I really fed-up with this software. I have not any knowledge on computer language, whatever input I gave always error showing.

koustavroy