Pathway enrichment analysis - simple explanation!

In this video, I will give you a brief overview of Pathway Enrichment Analysis for differential gene expression analysis. We will cover the main concepts behind it, how it works and how to use it to summarise your RNAseq results.
I will explain the different steps with examples to give you a clear overview of the core concepts behind it.
Hope you like it:)

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If you liked this video or found it useful, please let me know! Your comments and feedback are very much appreciated😊
If you have questions, don't hesitate to leave me a comment down below, I will answer as soon as I can:)
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[lilachgavish]

Thank you very much. I have just received a pathway enrichment analysis for the first time and was overwhelmed. Your explanations clarified much of the puzzle.

[sandracrnipolsek]

Finally a video on PEA! A good video about it is so hard to find :O

[jaymin]

Such a great video! thank you for your time explaining this topic in details.

[TheUnrealisticTruth]

It was so confusing until I found your video. Thanks for the great work!

[ruchitanavade]

Such an amazing video! I have been reading about this, and its all so confusing but this made it very clear! Thankyou!

[minhanadim]

Your lectures are really amazing and helpful. 👏👍 Thank you for simplifying these complex concepts.

[thelabOok]

Brilliant. I wish I'd found these videos back when I first started working with scRNAseq, BEFORE I muddled some of this out the hard way 😅

[thebestusernameevr]

Thanks for the video! I'm starting to study bioinformatics, so I appreciate this content!

[meltemtutar]

Your videos are so helpful! Thank you for making clear and engaging videos!

[monica]

very helpful video, underrated channel. thank you so much!!

[ItzelGpeAguilarLópez]

Thank you so much!!!! This helped me a lot.

[mehrnaziz]

I've just found your channel, so helpful, keep the great work up 👌

[WanshanLiu]

I am studying the analysis of transcriptomics and metabolomics. I like these videos so much about enrichment analysis, which are very helpful. lf you don't mind, l would like to ask your permission to share this video to the other website in China for the embarrassing reason that YouTube is blocked from accessing in China. Of course, l will give sources of the original website. Thank you very much.

[Zejiexemmyz]

Your videos are great and very easy to follow. For the background genes, how do you download GSEA GMT files for only genes expressed in the specific tissue you are interested in.

[researcher]

Hi, it was the best video I have ever seen regarding PEA but mam how about if we wanna perform PEA on pangenome data..is it possible to do that directly by just providing genome seq

[shandanaaali]

Its very helpful you so much but I request you please make a video on software where we can make charts for DEPs

[abelinha]

so as INPUT for the analysis, should it be DEGs, but based on a log2fc cutoff or all the genes i got from DEA?

[sanjaisrao]

Mam, please upload practical video too, Thank you

[Prabhakar-mc]

can we put non-differential genes identified in our analysis in the background list? or we have to put the whole human genes in that? because in contingency table it is showing non-differentially expresed (for Fisher's exact test calculation). please confirm

[LeslieSolorzanov]

Sorry for the silly question but what makes a gene diferentiated or not? That is not clear to me. I am not a biologist 😅