Bioinformatics in Python: DNA Toolkit. Part 4: Translation, Codon Usage

🚀 [DESCRIPTION]:

In this lesson, we continue building our DNA Toolkit by adding a DNA Codon dictionary/table. You'll learn to implement both Translation and Codon Usage functions, expanding the capabilities of our bioinformatics toolset.
#DNAToolkit #Bioinformatics #PythonProgramming #DNACodon #Translation #CodonUsage

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💻 [GITHUB REPO]:

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🔗 [VIDEO LINKS]:

Amazing Python lessons by Corey Schafer:

YouTube: "How to Read a Codon Chart"

GC Codon Data Structure:

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[BasicScienceSeries]

If you are getting Counter error :

This is what worked for my Counter error:

freqDict =
Thanks rebelCoder for these videos ! Keep Going..

[bryzsalvador]

return len(seq) -2, 3)] << why do we need to minus the length of the sequence by 2?

[talkpython]

Thanks a bunch for recommending @talkpython at the end of the video. :)

[dylanneal]

what is the "-2" for in the translate_seq function? Great video by the way!

[dr.lokbahadurshrestha]

In codon usage, I am getting "seq_type" is not defined.

[吕萌-ee]

Hi, I have a little question about this part.
When I use function -codon_usage,
"freqDict = dict(Counter(tmpList))
NameError: name 'Counter' is not defined" was happened.
I don't know why.

[f-man]

Hi, thank you for video
freqDict = dict(Counter(tmpList))
^
SyntaxError: invalid syntax
Do you know why that error can occur?

[moaf]

I have counter is not defined and i don't know which video to watch (it's title) pls

[ethan_bodybuilder]

Hi rebelCoder if you were to try and join the amino acids together and omit the [] and '' how would you do that?