How to perform Phylogenetic analysis using MEGA 11 software

#howtoperform #phylogenetic #multiplespecies #mega
In this video, I have how we can build phylogenetic tree of multiple species using MEGA11

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[carlosjflorezs.]

Professor, I am writing from Colombia. I have a project where I have to perform an analysis using MEGA 11, but I really didn't understand anything. I am a medical student, and the professor who sent us the project told us that he assigned it to his PhD students, but we really don't understand anything. He is going to give us a class explaining it, but 12 hours before handing in the project. I would like to know if you could help me.

[jawadali-iv]

Sir I have performed phylogenetic analysis with various sequences in MEGA X but every time it shows invalid character found. Sir where is the problem what should i do to resolve this problem. I am waiting for your response

[husnainahmad]

AOA sir. I am making phylogenetic tree of 168 proteins (40 for Arabidopsis, 41 for Rice and 87 for citrus) using this software. But, the software does not show all of the protein sequences and the alignment file also has some problem. Please suggest me any possible solution

[komalzia]

Assalam O Alaikum Sir! I am facing problem in visualising phylogenetic tree having 2908 sequences in it belonging to almost 140 plus plants using itol and related online software make the tree look so ugly because not even a single word is visible in it at default zoom level and zooming in will not capture the entire tree. Please suggest me anything useful in this regard. How can i visualise the entire tree at once without distorting the tree quality and information in it i.e. labels and their branching patterns.

[parismitakalita]

What does the colour code of different amino acids represent after doing CLUSTALW?