A beginners guide to ImageJ (and Fiji)

All you need to know for getting started with ImageJ (& Fiji).
Chapter timings.;
ImageJ vs Fiji 1.24
PlugIns 3.06
Open files 5.10
LUTs 6.20
Filters 10.20
Measurements 15.23
Thresholding 21.00
Binary processing 25.28
Open z-series 29.09 ** cut at 29.29
Reverse a dataset 32.22
Make a sub-stack 32.35
Z-projections 35.00
3D Volumes 38.30

[aysemusaogullari]

This is the best ImageJ tutorial video ever! Thank you so much for putting this together.

[fauziaquadir]

Best beginners video that takes you through ImageJ

[vimalsingh]

You are an excellent teacher and I have learned so much as a starting point in my masters thesis project.

[declanmoran]

Just started a project using Fiji. Completely new to me and this was really helpful. Thank you so much!

[Tspbml]

Waoh This tutorial is such a gem! Saved me from my dissertation! Thank you for uploading this

[BrookeCampbell-ubek]

Excellent video! Thank you for making and sharing with us.

[redjoey]

thank you for sharing this video. I have just started learning image processing and how to do it with ImageJ. This introduction was really helpful.

[abolfazl.dehkohneh]

I can't thank you enough! that was wonderful!

[indian-de]

Can you make a video on how to normalise fluorescence intensity between images of different conditions of the same experiments. Thank you so much for all the help you provide 😊

[HiraJaved-klfy]

hi! your content is amazing and I have a request can you also explain how to guess which function should be used on the images while observing them.

[dolcevita]

thank you so much for this! really helpful ! best lessons ever!

[pablufu]

Thank you for your science public service! Really amazing.

Any chance you have one on creating ratio images (division of two colors)? I am struggling as my images need thresholding. The result division image usually just looks like one of the channels, not an actual division, and all objects now have the same brightness...

[pantuabafras]

that was very informative. Thank you very much.

[Arshaqueh]

hii. i want to learn how to measure area of tympanic membrane perforations using image j software. please me guide me an approach how can i learn

[fl]

Thank you so much for the whole image analysis playlist, and especially this video! It was a great starting point for my master thesis, and really helpful.

[susheelkumarjoseph]

Also, Prof. can you please let us know where we can learn advanced ImageJ, I mean, further lectures including 3D, etc.

[PriyanshiChaturvedi-nswn]

Can ImageJ or Fiji use pictures clicked from an android phone?

[sharoncunningham]

Hi! Fabulous explanation :-) I have images of cell clusters (GFP-positive hepatocytes in immunostained liver sections) that I am struggling to count accurately using the basic ImageJ functions; different intensities and irregular shapes, and difficult to separate the adjoining cells. I tried the watershed method but the output looked like spiderwebs! Wondering if you had any suggestions. Thank you so much in advance!

[sandhyaprakashyj]

Hi sir I'm an postgraduate agricultural student in statistics from India in currently going to do an image analysis using maize(cob) image to predict yield actually I referred an article released by CIMMYT they have used this software to analyse bt they had cob analyser option in plugins folder bt while I open it is not there can u plz help me it'll be very helpful for my thesis plzzz

[DeloresCastillo-kd]

Walker Donna Wilson Brenda Thompson Carol