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Deep learning based plant phenotyping using Mask RCNN
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Part of the ECE 542 Virtual Symposium (Spring 2020)
Our project mainly focuses on detection of phenotypic traits such as leaf and collar count in a plant. The images of plants were manually annotated using MATLAB GUI. The data in was generated in COCO format as a JSON file. The proposed implementation is based on Mask R-CNN. Here, ResNet101 is used as the backbone network and the final model is obtained by training the model for 50 epochs with 500 steps per epoch and a learning rate of 0.001. The model output is obtained as bounding box for object detection, mask, class indicating leaf or collar, confidence score and the number of leaves and collars detected. The mAP values are obtained for different IoU threshold values greater than 0.5 and the loss for validation and training with respect to the number of epochs is reported. mAP value of 0.335 was obtained for the final model for an IoU threshold of 0.5 and the number of leaves and collar detections were compared with the ground truth and found the results to be promising.
Our project mainly focuses on detection of phenotypic traits such as leaf and collar count in a plant. The images of plants were manually annotated using MATLAB GUI. The data in was generated in COCO format as a JSON file. The proposed implementation is based on Mask R-CNN. Here, ResNet101 is used as the backbone network and the final model is obtained by training the model for 50 epochs with 500 steps per epoch and a learning rate of 0.001. The model output is obtained as bounding box for object detection, mask, class indicating leaf or collar, confidence score and the number of leaves and collars detected. The mAP values are obtained for different IoU threshold values greater than 0.5 and the loss for validation and training with respect to the number of epochs is reported. mAP value of 0.335 was obtained for the final model for an IoU threshold of 0.5 and the number of leaves and collar detections were compared with the ground truth and found the results to be promising.
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