Modern Insights from Microscopy Images: An Introduction to Web-based Methodologies

Matt McCormick, Kitware
I2K 2022 | Workshops #4 (post-sessions) | May 9th

Technological evolution poises modern, web-based methods as the future of bioimage analysis. Moreover, web-based methods are better suited to solve challenges such as extremely large images and reproducibility. In this tutorial, we will introduce the concepts, approaches, and tools for modern, web-based open source bioimage analysis. An introduction to the fundamentals of web-based imaging is covered through the topics of web-based image visualization, image data storage for the web, distributed image processing in the cloud, asynchronous programming, and re-usable deep learning components on the web. Content will be presented in Jupyter notebook modules consisting of oral presentations, interactive material, and hands-on exercises.

Keywords: web, cloud, javascript, webassembly, python, large-scale, distributed, dask, zarr