tSNE vs. UMAP vs. Destiny vs. PHATE vs. KNetL map

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Comparing PCA, tSNE, UMAP, PHATE and Destiny (diffusion maps) to KNetL map. Single (i) Cell R package (iCellR) provides great flexibility at every step of the analysis pipeline, including normalization, clustering, dimensionality reduction, interactive 2D and 3D visualization, batch alignment or data integration, imputation, and interactive cell gating tools, which allow users to manually gate around the cells.
  1. Reza
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