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Bioinformatics Creating and handling Sequence motif objects in Biopython
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#12daysofbiopython
In Day 8 of 12 days of Biopython video I am going to show you how to create and handle sequence motif objects in Biopython. I am going to show you how to create motif object, how to get count/profile matrix and how to get consensus and anticonsensus sequence. Also I am going to mention degenerate consensus sequence which deals with ambiguity.
Feel free to skip to chapter of your interest.
Chapters:
0:00 Intro
0:24 What are sequence motifs?
0:44 Creating motif objects in Biopython
1:27 Profile matrix/count matrix
2:48 Consensus sequence
3:47 Anti consensus sequence
4:00 Degenerate consensus sequence
4:49 Outro
You can find code/notebook connected to the topic here:
Github code:
My channel is aimed at everyone interested in Computer Science applications in biology. The mission is to simplify Bioinformatics concepts, one video at a time! Stay productive!
In Day 8 of 12 days of Biopython video I am going to show you how to create and handle sequence motif objects in Biopython. I am going to show you how to create motif object, how to get count/profile matrix and how to get consensus and anticonsensus sequence. Also I am going to mention degenerate consensus sequence which deals with ambiguity.
Feel free to skip to chapter of your interest.
Chapters:
0:00 Intro
0:24 What are sequence motifs?
0:44 Creating motif objects in Biopython
1:27 Profile matrix/count matrix
2:48 Consensus sequence
3:47 Anti consensus sequence
4:00 Degenerate consensus sequence
4:49 Outro
You can find code/notebook connected to the topic here:
Github code:
My channel is aimed at everyone interested in Computer Science applications in biology. The mission is to simplify Bioinformatics concepts, one video at a time! Stay productive!
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