Vaccine Epitopes Prediction | Immune Epitope Database (IEDB) | Step 2 | Lec 54 l Dr. Muhammad Naveed

Vaccine Desing STEP 2: Vaccine Epitopes Prediction

About Dr. Muhammad Naveed
(Associate Professor, Biotechnology, University of Central Punjab, Lahore)
Dr. Muhammad Naveed obtained a Ph.D. degree in Biotechnology (Genomics & Bioinformatics) from Quaid-e-Azam University, Islamabad with distinction. He has won Ph.D. indigenous & IRSIP scholarships from HEC. He has done Pre-Doc research at the University of Ghent, Belgium. HEC awarded best Ph.D. (IRSIP) Scholar of the year 2013 & QAU honored him as “Distinguished Alumni” in 2017. He is doing research projects in Bioinformatics & Molecular Biotechnology. He has supervised 45 MSc., 40 MPhil. & 01 PhD. He has published 74 Research articles with 253 impact factor and 700 citations, 01 book, and 03 book chapters. He has been awarded distinguished “Researcher of the Years (2016, 2018 & 2019)” by UoG and UCP.
#EpitopesPrediction #VaccineDesign #ImmuneEpitopeDatabase

[arafathossain]

How you sort out the excel sheet? Plz say

[saeedaNazir-ik]

sir your videos are very informative .I am finding difficulty in sorting of data on excel sheet. Kindly guide me

[MuhammadFaizan-miyo]

sir, it would be great honor if you discuss all aspects of the IEBD database with continuous and linear related epitope prediction.

[sethuranishil]

Very informative video, i got stuck on the filtering and shorting part can u please tell me how do i do that part or do u have a tutorial on how you shorted your IEDB datas on excel

[moshiurrahman]

How can i find new pathogenic proteins which have been not used in previous work

[poojatayde]

Sir, how do we check population coverage of B-cell epitopes?

[harshaloman]

Hello sir.
Very nice and informative video.
but I am facing a problem during MHC molecules binding prediction
particularly for 'prediction method and allele selection'.
please guide me.

[KMSKMS-of]

Very Nice video series, i would like to ask as you found few epitopes common in all alleles, what can I do if I found all epitopes common in all alleles, if in MHC-I, I got 20000 epitopes when I sorted alleles basis and then trying to compare common epitope in all alleles, I found all are common. In such case how to pick common and proceed further for Vaxijen etc.

[ankur]

Sir I couldn't the step of sorting and filtering method. Plz explain that step in more detail.

[radhikabiserwal]

I couldn’t understand the process of cell sorting please elaborate

[muhammadshahab]

Sir please little elaborate sort and filter

[hejmeddig]

Sir. The table gives 2 peptide columns. Peptide and core peptide as per the latest version. Which peptide sequence should be chosen ?

[mohammadhammad]

Assalm o Alikum Sir Can you please make video on DNA Star laser gene soft were which free to use and plz tell how is to use it and what can we get from that.

[fizzafarooq]

Sir apny Jo excel file tayar ki hy epitopes ki idhr stuck hn mn do din sy kindly isk upper ak video mn detail mn smja dein

[nopainnogain.sylvere]

Great! How can selected best epitopes to used for vaccine design ( MHC_I/II). Because you get more results of epitopes with their IC50, rank, etc, I struggle to sort out which best epitopes I can select?

[junaidofridai]

Kindly How we go for population of B cell

[iqrakhan]

Aoa respected sir There is an error in MHC class II epitope prediction, if we leave it by default that an exception raises to select the length of the sequences.

[madeehatariq]

Aoa. Sir if MHC II antigens IC 50 remains above 100 then what to do for this?. Would you please verify this problem?

[VyshnavieRSarma-rbur]

Greetings to you Sir. Thank you very much for such informative tutorial. I will really appreciate it if you can pls upload subtitles to these tutorials Sir. Thank you and warm regards

[BioinformaticsWANA]

Sir your lecture is very informative but sir i have one problem how you did sorting and filtering the epitopes in excell. Stuck at this point