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Phylogenetics Tutorial - Bayesian Analysis with BEAST & FigTree
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This video walks you through the second part of phylogenetic analysis using Sanger Sequencing products for small amplicon outputs (such as CO1, H3, 28S, etc.). This workflow is not applicable for large genomic outputs.
Timestamps:
0:00 -Export alignment from MEGA
1:30 -Create XML file using BEAUTi
4:30 -Run phylogenetic analysis using BEAST
6:14 -Create target tree using TreeAnnotator
7:47 - Import & Edit resulting tree using FigTree
Note: This workflow is self-taught, and it is very possible I have done something wrong. If I have, please let me know! However, this process has worked for me so far!
The brands/programs I use are listed below: (Proceed at your own risk. This video is not sponsored or supported by these companies or any of their affiliates.)
BEAST Tutorials from Manufacturer's website:
Timestamps:
0:00 -Export alignment from MEGA
1:30 -Create XML file using BEAUTi
4:30 -Run phylogenetic analysis using BEAST
6:14 -Create target tree using TreeAnnotator
7:47 - Import & Edit resulting tree using FigTree
Note: This workflow is self-taught, and it is very possible I have done something wrong. If I have, please let me know! However, this process has worked for me so far!
The brands/programs I use are listed below: (Proceed at your own risk. This video is not sponsored or supported by these companies or any of their affiliates.)
BEAST Tutorials from Manufacturer's website:
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