BICCN Omics Virtual Workshop Day 2 - Oct 07, 2021

This workshop recording guides you through finding data in the Neuroscience Multi-Omic (NeMO) Archive, analyzing that data in Terra through workflows (pipelines) and interactive analysis, then publishing the results to a study in the Single Cell Portal (SCP). This workshop was offered as part of the Brain Initiative Cell Census Network (BICCN) virtual workshop series.

00:00:00 - Welcome, setup & icebreaker
00:02:12 - Intro to Terra
00:10:46 - Terra guided tour
00:31:01 - Data in NeMO
00:37:50 - Select your data
00:48:08 - Running workflows (Optimus pipeline)
01:06:12 - Set up your notebook cloud environment
01:09:22 - Running workflows (Cumulus pipeline)
01:15:04 - Explore outputs using notebooks
01:31:10 - Running workflows (checking outputs)
01:33:45 - SCP intro
01:45:37 - Demo an existing SCP study
02:29:01 - Wrap-up- Questions and Resources

This workshop was presented by Elizabeth Kiernan, Anton Kovalsky, and Leyla Tarhan, and of the Broad Institute.