How I use Bio Python to Extract ANY Sequences from a FASTA | Python for Bioinformatics

This tutorial shows you how to extract sequences from a fasta file using the python bioinformatics package, biopython.

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Reading FASTA files with Python for beginners

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Download the example data from here

Chapters
01:17 Download the example data
04:22 Import Python Libraries
04:46 Read the FASTA file
07:40 Extract the sequences of interest

Python for Bioinformatics, Read FASTA files with Python
How I use BioPython to Extract ANY Sequences from a FASTA | Python for Bioinformatics

Commands used

from Bio import SeqIO
SeqIO.parse
SeqIO.write

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How I Extract ANY Sequences from a FASTA file using Python | Python for Bioinformatics

#bioinformatics #genomics #bioinformática #machinelearning #python #pythonprogramming #pythontutorial #pythonforbeginners #pythonprojects #pythoncourse #python3

[bioinformaticscoach]

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[saodiocou]

Hi Kobina, you are a genius and I would like to learn from you how to do bioinformatic. Thanks

[sikandarazam]

Excellent and easy way to make us understand. Thank you for that. I have one query, I would be really thankful if you answer. My query is ( i have data set containing 30000 Fasta sequences and I want to randomly extract 1500 sequences from this data set. As I am a beginner in python. does python can do this task or any other bioinformatic tool that could be helpful. I am looking forward to hearing from you. Thank you

[KTROWS]

Where is the video you mention to take the sequences out of multiple fasta files?

[hibamahmood]

hello sir...thank you for this informative video... may I ask you about the data file... have any idea about how to save the sequences as tree in python

[rianrafsan]

Coach can you please do a project based tutorial?Also it would be anice if you would give possible project ideas we could implement based on what you taught...

Thanks