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ShortClips | Count the number of snps and indels in a vcf file using bcftools
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#DataScience #Bioinformatics #Linux #variants
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Full tutorial
Download the example data here
bcftools manual page
1000 genome project ftp site
Install bcftools using anaconda
Install bcftools by building from source:
Music
Creative Commons — Attribution-ShareAlike 3.0 Unported — CC BY-SA 3.0
Support my work
Full tutorial
Download the example data here
bcftools manual page
1000 genome project ftp site
Install bcftools using anaconda
Install bcftools by building from source:
Music
Creative Commons — Attribution-ShareAlike 3.0 Unported — CC BY-SA 3.0
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