Reading Files - 3D Convolutional Neural Network w/ Kaggle and 3D medical imaging p.2

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Reading the DICOM scans into Python using Pydicom.

If you found this Kernel helpful, please upvote on Kaggle using the link above.
If you have questions/comments/suggestions, post either on the video or on the Kernel and I will do my best to help you out!

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At this point I am just binge watching your videos like a TV show... Don't have time to follow the analysis right now, but I am learning a lot anyway just by watching it. Thanks, man.

antopolskiy

dude, you're in the zone when doing this. good stuff!

CristiVladZ

Man, you are awesome! I was looking for some code for reading DICOM files and I found that you have this video (and even a Kaggle competition).

auraSinhue

These are excellent videos that should have 10x more likes on them!

carmineg

Amazing tutorial, can't expect better than this.

parikshitagarwal

Just want to quickly point out that even though opencv is imported under the name "cv2", you actually have to do "pip install opencv-python"

yanfengliu

Dear Sentdex!
Isn't it be better to use x.SliceLocation instead of x.ImagePositionPatient[2] ?

breddowen

Hi, thank you for the tutorial. Really awesome!

May I ask you on how to use / extract / convert nifti files to dicom files in Jubyter (*.nii to *.dcm) and then following your tutorial from there? Is there any command to run nifti files in Python?

Thanks a lot!

omarismail

you rock for posting this info. this is super helpful just to get a lay of the land on kaggle and hopefull this will help me test my new ML rig with the kaggle python docker container and nvidia-docker ... if I am setting myself up for failure any tips would be greatly appreciated.

cupajoesir

Can you please share the dataset for this asap?

preethin

Harrison, I'm totally lost in this tutorial. You said we could use the virtual environment on Kaggle. I found the Data Science Bowl comp and created a new Python notebook but I don't see where to enter code. My options are Notebook, Code, Data, Comments, Log, Versions, Options and off to the right, Fork Notebook and Edit Notebook.

When I press Edit Notebook, I see the input files but the space around notebook is blank and just has this spinning wheel forever like something is trying to load. Maybe something wrong with the website? I did try pressing fork notebook and got a 502 error, so maybe the site is just acting up. Not very familiar with Jupyter Notebook. Man, times like these, you really appreciate how simplistic IDLE is.

mkoller

Hello, can you please provide me with the link to download the dataset for practice? I couldn't find it on Kaggle

nguyenphihung

Can you give me the link of next video?

abhaykapoor

I saw that jupyter notebook. In one of YOUR videos. I got emotional :')

RobertoFrobs

how to load HDR files in python, I need to load 3D MRI scans which are in .hdr format

yeshwanthgunda

do you know the names of the attributes? I have the files and I asked by email, but they didn't answer me. it's for college, it's for study

tag

Hello, I am following Your videos to implement this CNN but the Dataset I have found contains images in .MHD and >RAW format and all in one folder. So could You tell me how may I convert from .MHD to .DCM or perhaps If You have the dataset available, could You share a link to it so that I may download?

sohailmomon

How to read data from a zip file inside kaggle kernel? I tried by import zipfile command and pass in the URL for the dataset like this: zf = command but it gives me an error saying that no such file or directory. What should I do to use that zip file in the kernel?

LionGuestStudios

i have a question please and i hope you give me an answer here in a comment or in the next Q and A i m really in love with python programming now and it's all because of you i just started but i want to be able to make AI stuff with neural networks and deep learning and data analytics but every time i search for the requirements i see you need to know math like calculus linear algebra and probability and to be honest i m not good at math like at all i m a geologist what should i do what is your advice should i stop and get into math tutorials first or do something else ?

hamzasalhi

Maybe a kaggle tutorial for starters (leaf recogn., cats and dogs)?Thanks, Regards

johanverm

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