Genetic Correlation Using Python

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How to calculate the genetic correlation between phenotypes from two genome-wide association studies.

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// LDSC software

// Python code

// Psychiatric Genomics Consortium

// How to create a python2 environment

// eur_w_ld_chr data

// Timestamps
0:00 Introduction
1:27 LDSC python environment set-up
5:09 Munge summary statistics
13:33 Genetic correlation
15:58 Comparison to paper

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  1. math et al
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Комментарии
Автор

@math et al : Hi, thank you so much for the helpful video. However, I was trying to munged panic data file and got this error! Would you please help me to find out why? I am using the same file and same commands. 
Traceback (most recent call last):
File "/Users/dss/ldsc/munge_sumstats.py", line 627, in munge_sumstats
raise ValueError('Could not find {C} column.'.format(C=c))
ValueError: Could not find SNP column.
Thank you!

southfreak
Автор

Where is the data we want in all the zip folders we got. I can't find it. I'm studying alcohol dependance.

liaweissmann