Copy Number Variation Analysis using GISTIC - Tutorial

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#CNV #Alterations #aCGH #Bioinformatics #GenePattern
  1. Farhan Haq
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Комментарии
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Thank you so much. This really helped me a lot.

grayneo
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It was very helpful! I really needed this tutorial. Thank you very much :)

yujuahn
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dear farhanq thanks a lot for your tutorial on GISTIC, I used this protocol to analyse TCGA COAD cnv, however I faced this error " shortened 60segments in ... that overlap by one marker" how should i resolve this issue?

hanieazari
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Please suggest me some topics for research and I want to do ph d computer engineering (bioinformatics field)

veerpalbrar
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Please help me for choosing research topic in bioinformatics computer science field

veerpalbrar
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The following error has been reported when using gistic online analysis. How can I solve it?
Index exceeds matrix dimensions.
Error in normalize_by_arm_length (line 85)
Error in make_sample_B (line 50)
Error in perform_deconstruction (line 68)
Error in (line 126)
Error in run_focal_gistic (line 151)
Error in run_gistic20 (line 124)
Error in run_gistic2_from_seg (line 249)
Error in gp_gistic2_from_seg (line 97)
MATLAB:badsubscript

yiqingzhang-wvuu
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Thanks for the tutorial. Just wondering how the threshold is derived for assigning the copy number (-2, -1, 0, 1, +2)

v.