RNA-seq Fusion Analysis

The RNA-seq pipeline will automatically run the Map Fusion Reads module on single-end RNA-seq data, or the Combined Fusion Analysis module on paired-end data. Both modules will run OmicSoft's FusionMap method to identify unmapped reads that span multiple genomic locations, indicating possible gene fusion events. The Combined Fusion Analysis module will also perform Paired-end fusion analysis, which looks for read-pairs mapping to different genes. Results can be viewed, filtered, and sorted in report tables, or viewed directly in the Array Studio Genome Browser.