How to Filter High Quality Variants using BCFTOOLS | VCF files

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Download the example data here:

How to Install BCFTOOLS
How to install bcfools

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[HaileG-]

Dear sir how can I filter variant line only from the vcf file having variant line and coverage in one column using bcftools

[humarafique]

A very informative video for the absolute beginners, can you tell me what's the meaning of GT: AD: DP: GQ: PL. How can we define their values? And how do we define the criteria of high- and low-quality SNPs. I google them but I'm not satisfied the google's and chatgpt answer. Can you explain it to me please

[juhikhurana]

Hello, first of all thank you so much for all the informative videos. As I am new to this Omics field, your videos are helping me a lot. Though I have one question, Can we convert vcf file to csv format for manual post processing of data @ Bioinformatics Coach