W31: Spatial Transcriptomics – Day 1

Spatial transcriptomics is an emerging field that bridges molecular biology and anatomy. Over the last decade, a battery of assays have been developed that profile gene expression in-situ, i.e, measuring the abundances of mRNA molecules in cells and tissues while retaining information about their spatial locations. This workshop will introduce the basic concepts, major techniques, and typical analysis workflows in spatial transcriptomics. It will also offer guided hands-on coding exercises for the analysis of public spatial transcriptomic datasets.

[MohammedAli-stly]

Nice job! but quick question I am Ph.D. student in the pharmacology and toxicology department with a pharmacy degree background wanted to know how feasible it is to learn transcriptomes in 6 months internship?

[joaopauloferreirarodrigues]

Great! One observation, we cant do double, triplo fish, Fish and immunofluorescence etc.

[pent]

Could you provide more detailed info regarding the publication @31:21? Michael Nunn, 2020. I can't find the orginal article.

[HeatherGreen-nb]

When you do multiple rounds of smFISH, are you moving the slide from the microscope to the bench and back again after each round? How are you able to preserve the same position when you overlay the multiple images? A small shift of the slide placement could result in a shift image, right? How is this overcome?

[我不好说-mg]

can i have the data mentioned in the video for processing?

[xiaohuiyu]

what's the difference between multiplexing vs throughput?