Preparing fastq for RNAseq analysis

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Toy experiment to demonstrate SeqBox RNAseq workflow: mouse triple negative breast cancer 4T1 cell line, (each experimental condition is in triplicate, 1 million reads Single end 50 nts Illumina sequences), comparison between cells grown on plastic (e) versus low attachment media (p)
Data are available at:
  1. SeqBox
  2. SeqBox
  3. RNAseq workflow
  4. NGS
  5. Next Generation Sequencing
  6. Illumina data
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