Bash scripting for Bioinformatics

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Bash scripting for Bioinformatics -- Phil Williams explains the basics of using bash scripting to download and process next-generation sequencing data. This includes using wget in an automated high throughput method to download fastq data. Examples of using the fastq_quality_trimmer and fastqc applications are demonstrated. These concepts are integrated into a data analysis pipeline that can be run on the server in the background allowing the user to logoff.

The Arkansas Bioinformatics Network

UALR MidSouth Bioinformatics Center
  1. phwilliams256PhD
  2. Bioinformatics
  3. Bash scripting
  4. Linux
  5. UALR MidSouth Bioinformatics Center
  6. The Arkansas Bioinformatics Network
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Комментарии
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Very nice explanations. Love slicing and dicing. ;))

Actanonverba
Автор

So informative. Thanks again. Any plans on making new vids?

pleas
Автор

Hello, why in the script of minute 10:26 when you modify FILEONE and get FILETWO I cannot save into a file FILETWO. when I ls I get : no such file. I am using mac terminal, could there be something different?

aitanamaquart
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