277 - 3D object segmentation in python

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Code generated in the video can be downloaded from here:

Do not waste your time with deep learning to segment relatively easy to segment objects against a background. This tutorial explains the simple process for 3D object segmentation by using Voronoi labeling from the pyclesperanto library in python

# For installation instructions of the pyclesperanto package,
please refer to the following link

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Thank you Sreeni. I have problems importing the pyclesperanto module. After installing, when I import pyclesperanto_prototype as cle, I get the following error : ImportError: cannot import name from 'skimage._shared.utils' I googled and still couldn't solve the issue, do you have any idea ?

EkaterinaGolubeva-prih

Thank you. This is extremely well-clear explained.

anjaonishchenko

Thank you so much for this video. I have a question PLZ! is there a recommended way to get a .csv file with the list of particles and their size?

mohammedkrameche

Awesome video, this might just unlock my thesis

danielngumba

Hi, very informative video. I want segmentation on DICOM coronary video image, what do you recommend, and any coding link you recommend for me?

umersaeed

Thanks for the videos on 3D image processing. I am working on 3D TIFF files of cells and will find this extremely useful. Can you please do some videos on how we might extract features from whole 3D images such as shape, area and high intensity pixels?

suleimanmustafa

Thanks for your great tutorials. I am training a 2D network to segment brain vessels. After getting the prediction mask of the network, I don't know how to visualize the vessel network in 3D. Any suggestion would be helpful.

ABRAR

Great video. For more complex images, where this would fail I recommend StarDist3D. Would also be great to have a video about tools for manual labelling of 3D training images for deep learning (unfortunately not many options around...)

NicolaRomano

Many thanks for these videos. I am working on predicting ganglion size (each ganglion has three directions) distribution in a 3-D digital rock. Would you mind doing some videos on that?

gloglo

Thanks for efforts
Hopefully if you work on xray/ct lungs segments

mahermohsin

How would I approach 3D segmentation of mitochondria?

Brickkzz

277 - 3D object segmentation in python

277 - 3D object segmentation in python

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