Все публикации

Dimension Reduction

Overview of analyzing methylation arrays using minfi

Supervised Learning, Algorithmic Methods Part 3: Classification trees, bagging, random forests

Supervised Learning, Algorithmic Methods Part 2: Linear & Kernel Discriminant Analysis & KNN

Supervised Learning, Algorithmic Methods Part 1: Bayes Decision Rule

Supervised Learning Part 4: Test Set and Cross-Validation for Model Evaluation

Supervised Learning Part 3: Logistic Regression and Penalized Logistic Regression Models

Supervised Learning Part 1: Multiple Linear Regression for Predicting a Continuous Phenotype

Supervised Learning Part 2: Penalized Linear Regression Models

Cluster Analysis for Gene Expression Data Part 3: Partitioning Methods

Cluster Analysis for Gene Expression Data Part 2: Hierarchical Clustering

Cluster Analysis for Gene Expression Data Part 1: Overview

Differential Expression Analysis for RNA-Seq Part 3: Negative Binomial regression and DESeq2

Differential Expression Analysis for RNA-Seq Part 2: Introduction to Poisson regression

Differential Expression for RNA-Seq Part 1: Using the limma Bioconductor package

Differential Expression for Microarrays Part 1: False Discovery Rate control

Differential Expression for Microarrays Part 1: Hypothesis Testing

Differential Expression for Microarrays Part 2: Family-wise error rate control

Pre-processing: Expression Summaries

Normalization Part 5: RNA-Seq

Normalization Part 4: Methods for Affymetrix

Normalization Part 3: Intensity Dependent Normalization (MA Plots; Lowess Regression)

Normalization Part 2: Global Normalization (review of Linear Regression)

Normalization Part 1: Overview