Quantitative Biological Research with Python - Lesson 12, TA 2/3 - Modules, VCF, Multivar. Analysis

Part 2/3 of Nadav's TA lecture on the 12th week of the course, given on 2020-01-29.

Topics covered in this part:
1. Parsing VCF files in Python with the pyvcf module [0:00]
2. Multivariate analysis: [16:32]
2.1. Motivation (confounding) [16:50]
2.2. Stratification vs. multivariate models [19:36]
2.3. Multivariate linear regression [22:28]
2.4. Contrasts [28:01]
2.5. Logistic regression [29:15]
2.6. Stratification - pros & cons [33:45]