NCBI NOW, Lecture 1, NCBI Resources for NGS

This lecture shows you how to find and download genomic datasets from NCBI, provides some common NGS terminology, introduces the content of the NCBI NOW course, and tells you how to get answers to your questions during the course.

[kasonk]

This lecture would have been much better if the transition between slides had been displayed and resolution increased

[giuliettq]

Hi, are the slides of this lecture (and the following ones) available?

[marwanmahmoodsaleh]

Hello
I had done the whole genome sequence by NGS (Illumina) of the bacteria. The files I received from the company are Fastaq1, Fastaq2, Filtered 1 Fastq Filtered 2 Fastq and analysis results file include :rmdup.bam.bai, rmdup.bam, filtered vcf and annotated vcf. Please tell me which of these files should be converted to FASTA and submitted to NCBI? Thanks

[nutanthakur]

I wish to submitt 16sRNA illumina Miseq metagenomics data to NCBI. which kind of tools and NCBI subset will be suitable for this purpose