Ensembl Tools

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Do you want to pull out sections of VCF or BAM files? Convert genomic coordinates between assemblies? Get FASTA and GFF files formatted to work with your preferred aligner? BLAST sequences against Ensembl genes and genomes? Predict the effect of variants on genes and proteins? Yes, then Ensembl Tools are for you.

Taught by Emily from the Ensembl Outreach team, this webinar will show you what tools are available in Ensembl and how you can use them in your work, taking you through the processes step-by-step. We'll look at:

- Data Slicer
- Assembly Converter
- File Chameleon
- BLAST/BLAT
- Variant Effect Predictor (VEP)

This webinar took place on 31st May 2017. You can download the slides from this webinar in Train online.

See the EMBL-EBI training pages for a list of upcoming webinars:
  1. European Bioinformatics Institute - EMBL-EBI
  2. Genomics
  3. Genetics
  4. Genetic variation
  5. Bioinformatics
  6. BLAST search
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