2.17 2.18 How to view BAM alignments in IGV

This video shows you how to create a .genome file in the downloaded IGV 2.3 application, load bam and bai file as a track, and zoom to expected region of alignment. The "Genes and Genomes" lab class used 16S PCR primers so we expect most alignment to be in the 16S gene.

[veerthakur]

Hi, excellent videos. Can you share videos on solid tumor mutation libraries analysis.

[khanmohdsarim]

I am unable to find create genome option in IGV genome section. I have uploaded "Load from file" but upon uploading its not reading uncompressed fna file and, and how to upload gtf file in such case?