Docker snakemake

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Integrate Docker into your Snakemake pipeline (with one line of code!)

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Docker Install and Run - Genomic data Snakemake workflows - ILIAD

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Snakemake #6 Using Snakemake with Singularity for creating reproducible pipelines

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Visualization of Snakemake development

0:30:12

An introduction to Snakemake tutorial for beginners (CC248)

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Google Cloud Platform (GCP) Install and Run - Genomic data Snakemake workflows - ILIAD

0:16:07

Snakemake #1 Writing your first Snakefile

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Reproducible data analysis with Snakemake

0:05:15

Snakemake Architecture

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snakemake analysis example

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Snakemake

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Snakemake configfile

0:04:58

Snakemake #4 Including external snakefiles, modularization

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Day 3 Session 34 (Afternoon): Introduction to Snakemake

0:38:28

Johannes Köster - Transparent, reproducible, and adaptable data analysis with Snakemake

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20180627 Johannes Köster: Reproducible data analysis with Snakemake

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GitHub and Snakemake Tutorial

1:03:38

Snakemake

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Wrapping a bioinformatics tool in Docker - example with metagenomic assembly tool megahit

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Day 3 morning session: Dr. Phili on Snakemake

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Reproducible Data Analysis with Snakemake

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How to use GitHub actions to run a Snakemake pipeline (CC260)